| Season | Team | Competition | MP | G | A | Rating | ||
|---|---|---|---|---|---|---|---|---|
| 2021 | Athletico Paranaense | Serie A | 0 | 0 | 0 | 0 | 0 | – |
| 2020 | Athletico Paranaense | Paranaense 1 | 3 | 0 | 0 | 0 | 0 | – |
| 2020 | Athletico Paranaense | Serie A | 18 | 0 | 0 | 4 | 0 | 6.7 |
| 2019 | Athletico Paranaense | Serie A | 7 | 1 | 0 | 2 | 0 | 6.9 |
| 2018 | Athletico Paranaense | Serie A | 23 | 1 | 5 | 5 | 0 | 6.9 |
| 2017 | Athletico Paranaense | Paranaense 1 | 4 | 0 | 0 | 1 | 0 | – |
| 2017 | Athletico Paranaense | Serie A | 29 | 2 | 3 | 5 | 0 | 6.9 |
| 2016 | Fluminense | Serie A | 11 | 0 | 0 | 2 | 0 | 6.9 |
| 2016 | Fluminense | Carioca 1 | 8 | 0 | 0 | 2 | 0 | – |
| 2015 | Fluminense | Serie A | 3 | 0 | 1 | 0 | 0 | 6.8 |
| 2014/2015 | Internazionale | Serie A | 2 | 0 | 0 | 0 | 0 | – |
| 2013/2014 | Internazionale | Serie A | 31 | 3 | 0 | 3 | 0 | – |
| 2012/2013 | Internazionale | Serie A | 8 | 0 | 0 | 1 | 0 | – |
| 2011/2012 | Parma | Serie A | 12 | 1 | 0 | 1 | 0 | – |
| 2011/2012 | Internazionale | Serie A | 4 | 0 | 0 | 0 | 0 | – |
| 2011 | Santos | Paulista A1 | 13 | 1 | 0 | 0 | 0 | – |
| 2010 | Cruzeiro | Serie A | 27 | 0 | 0 | 9 | 0 | – |
| 2009 | Cruzeiro | Serie A | 27 | 3 | 0 | 3 | 0 | – |
| 2008 | Cruzeiro | Serie A | 0 | 2 | 0 | 0 | 0 | – |
| 2007 | Cruzeiro | Serie A | 0 | 1 | 0 | 0 | 0 | – |
| Total | 230 | 15 | 9 | 38 | 0 | – | ||
| Date | From | To | Type | |
|---|---|---|---|---|
| 01 Jan 2017 | Fluminense | Paranaense | Free | |
| - | Inter | Fluminense | Free | |
| - | Inter | Parma | Loan | |
| - | Santos | Inter | € 5M | |
| 01 Jan 2011 | Cruzeiro | Santos | € 2M |
Jonathan career history shows progression across clubs and competitions, including club timeline, national team appearances and overall career totals.